rs16782966 SNP Detail

Summary

• ID
  rs16782966
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95434374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATCTTTG GAGTGAGCAC
  CACACTTCAG GATGACCATG AGGGCTCCTG GCCACGCTGC CATGTATGTA CTGTCTGCTT
  CTTTTGTTTT CTTCATATAT GGCCTTAAAC ATGCTCTATC TTTTCATCAG TCAGGCCGCT
  GGGATTTTAA ATCTTTGCTT TCAGGAAGTA AGCTGAAAAC AAAAATCATG CCGCCCATTC
  R
  CCTCTTGTTT TTCTGATTAG GGAGAGTCTG TTTGAGAGAT TCTTGTTGGC TTAACTGTGT
  GATAACTGTG TTGTATGTGG ATGCGGTGAG ATTTAAACCT GGGCTCCTGT GAAGCATGAG
  CTGAAGGCTC ACACCATTTA AAAAATTCAG TTTCAGCCGA GGAGTGGCGC TTCACCCCTT
  TAATCCCAGC ACTCCGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
ss24742409	Ctss_AN7918_3	ROCHEBIO	RPAMM	f	SNP				G		G	G	G	A	G	G	G	G	G	G
ss24742506	Ctss_AN7910_4	ROCHEBIO	RPAMM	f	SNP	G	G	G		G				A				G			G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
rs16782966					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95434374 () rs orientation: forward

Symbol	Name	Function Class
Ctss	cathepsin S	Intron
Rr397840	regulatory region 397840	160 bp downstream
Rr580966	regulatory region 580966	1981 bp distal
Rr580967	regulatory region 580967	267 bp distal
Rr580968	regulatory region 580968	within coordinates
Tssr30563	transcription start site region 30563	266 bp downstream
Tssr30564	transcription start site region 30564	252 bp downstream
Tssr30565	transcription start site region 30565	192 bp downstream
Tssr30566	transcription start site region 30566	174 bp downstream