rs16782965 SNP Detail

Summary

• ID
  rs16782965
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95434171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGATGGCC TCTACCATGG
  AGCCCTCTGG GCAGCTCATT ACACACAAAC TGTCCCAAGG TGAGAAGGAG AGGGCGGAGG
  CAGCTGTTCT CATAAGTCTT TAAATGAAAC CGAAATGAAA GTTCACTTCC TCATTGTGGA
  TGCTTCATGT GACAAGCTCC GATTTCTTTT TAGAGTCATT TCAAGCAGCC TCCTGCTGCC
  M
  GGGACATCTT TGGAGTGAGC ACCACACTTC AGGATGACCA TGAGGGCTCC TGGCCACGCT
  GCCATGTATG TACTGTCTGC TTCTTTTGTT TTCTTCATAT ATGGCCTTAA ACATGCTCTA
  TCTTTTCATC AGTCAGGCCG CTGGGATTTT AAATCTTTGC TTTCAGGAAG TAAGCTGAAA
  ACAAAAATCA TGCCGCCCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ
ss24742408	Ctss_AN7918_2	ROCHEBIO	RPAMM	f	SNP						A			A	A	A	C	A	A			A	A	A		A		A	A
ss24742503	Ctss_AN7910_1	ROCHEBIO	RPAMM	f	SNP	A		A	A	A	A	A		A			C							A								A	C
ss46775213	NES10756272	PERLEGEN	MM_PANEL2	f	SNP		A		A	A	A		A		A		C	A		A	A				A		A			A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ
rs16782965					SNP	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775213	NES10756272	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95434171 () rs orientation: forward

Symbol	Name	Function Class
Ctss	cathepsin S	mRNA-UTR
Gm56808	predicted gene, 56808	1975 bp upstream
Rr397840	regulatory region 397840	within coordinates
Rr580965	regulatory region 580965	1986 bp distal
Rr580966	regulatory region 580966	1778 bp distal
Rr580967	regulatory region 580967	64 bp distal
Rr580968	regulatory region 580968	within coordinates
Tssr30563	transcription start site region 30563	63 bp downstream
Tssr30564	transcription start site region 30564	49 bp downstream
Tssr30565	transcription start site region 30565	within coordinates
Tssr30566	transcription start site region 30566	18 bp upstream
Tssr34487	transcription start site region 34487	1965 bp upstream