TGTATGAAAC CGCACCCACA AAGCCTCATC TACAATCTCC ATGTTGGATT TCTTTGCACT CCACGGAGTC TTTAAGGATT CCTGGGAAGC AGTCTGATTA S AGAAGCCGCC TACGTTTTTT GGTTTTTATT ACGATTTTCC CTAACAATAT TTACACCCTT CGTTTCCTTT CCTAATCCGA TTGTGACTCA ACTCTGTCGA S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/HeJ |
A/J |
AKR/J |
B10.D2-Hc<0> H2 |
BALB/cByJ |
BALB/cJ |
DBA/2J |
NZB/BlNJ |
SPRET/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss20412070 | PS02178558 | PERLEGEN | MM_PANEL | f | SNP | G | G | G | G | G | G | G | G | G | C |
SNP Consensus Information | |||||||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/HeJ |
A/J |
AKR/J |
B10.D2-Hc<0> H2 |
BALB/cByJ |
BALB/cJ |
DBA/2J |
NZB/BlNJ |
SPRET/EiJ |
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rs13496590 | SNP | G | G | G | G | G | G | G | G | G | C |
Location: Chr5:134344833 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi16718 | CpG island 16718 | 821 bp distal | ||||||
Gm71534 | predicted gene, 71534 | 315 bp downstream | ||||||
Gtf2i | general transcription factor II I | mRNA-UTR | ||||||
Rr378666 | regulatory region 378666 | within coordinates | ||||||
Rr621989 | regulatory region 621989 | 1714 bp distal | ||||||
Rr621990 | regulatory region 621990 | 1167 bp distal | ||||||
Rr621991 | regulatory region 621991 | within coordinates | ||||||
Rr621992 | regulatory region 621992 | 235 bp distal | ||||||
Tssr1657 | transcription start site region 1657 | 1021 bp upstream | ||||||
Tssr49088 | transcription start site region 49088 | 1988 bp downstream | ||||||
Tssr49089 | transcription start site region 49089 | 987 bp downstream | ||||||
Tssr53631 | transcription start site region 53631 | 1555 bp upstream | ||||||
Tssr53632 | transcription start site region 53632 | 1527 bp upstream | ||||||
Tssr53633 | transcription start site region 53633 | 1506 bp upstream | ||||||
Tssr53634 | transcription start site region 53634 | 1480 bp upstream | ||||||
Tssr53635 | transcription start site region 53635 | 1431 bp upstream | ||||||
Tssr53636 | transcription start site region 53636 | 1408 bp upstream | ||||||
Tssr53637 | transcription start site region 53637 | 1303 bp upstream | ||||||
Tssr53638 | transcription start site region 53638 | 1258 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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