rs13496589 SNP Detail

Summary

• ID
  rs13496589
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134342758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCGAACCC GACACACACA
  CACACACATA CAAACATATA CACACACACA CAAACGCTCA CACAGCGAAC CCGAGCGCGA
  CCCCACGGGG CTCAGGAGGG GCCGTGGCAC CCCGCGCGCC CGCGCGCGCG TCCCCGAGCG
  AGCCCTCCCA GCCAATCAGG AGCGAAGGAG CAGGGCTGCG CGGCCCCGCC GGGGTACGCT
  M
  ACTCGTCCGC TCGTTCACGC GCGGGGGGCT GCTCGCGCGA GACCATCCCT CTCAAACACC
  CCCAACCCAG TCCCCCGACC ACCGTCCACG CGTCTGGATA CAATGTACGC AGGCGCGGAA
  CGCCGCGAGT CCTCCCCCAC GCACCACGGG TGTGCGCGTG CAACTGTCGT CTCCCCCCAC
  CACCAGCCGC CCCATCCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
ss20412069	PS02178555	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
rs13496589					SNP	A	A	A	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134342758 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16718	CpG island 16718			within coordinates
Gm71534	predicted gene, 71534			898 bp upstream
Gm71761	predicted gene, 71761			129 bp upstream
Gtf2i	general transcription factor II I			Intron
				mRNA-UTR
Rr378666	regulatory region 378666			865 bp upstream
Rr399401	regulatory region 399401			137 bp downstream
Rr621987	regulatory region 621987			1537 bp distal
Rr621988	regulatory region 621988			140 bp distal
Rr621989	regulatory region 621989			within coordinates
Rr621990	regulatory region 621990			768 bp proximal
Rr621991	regulatory region 621991			909 bp proximal
Rr621992	regulatory region 621992			1819 bp proximal
Tssr1657	transcription start site region 1657			1052 bp downstream
Tssr49086	transcription start site region 49086			240 bp downstream
Tssr49087	transcription start site region 49087			208 bp downstream
Tssr49088	transcription start site region 49088			75 bp upstream
Tssr49089	transcription start site region 49089			1042 bp upstream
Tssr53628	transcription start site region 53628			1355 bp upstream
Tssr53629	transcription start site region 53629			685 bp upstream
Tssr53630	transcription start site region 53630			84 bp upstream
Tssr53631	transcription start site region 53631			502 bp downstream
Tssr53632	transcription start site region 53632			539 bp downstream
Tssr53633	transcription start site region 53633			552 bp downstream
Tssr53634	transcription start site region 53634			581 bp downstream
Tssr53635	transcription start site region 53635			610 bp downstream
Tssr53636	transcription start site region 53636			654 bp downstream
Tssr53637	transcription start site region 53637			733 bp downstream
Tssr53638	transcription start site region 53638			774 bp downstream