rs13496588 SNP Detail

Summary

• ID
  rs13496588
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134340989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGA ATTACCAAAT TCAAAGAGGA
  S
  CTGGGCTACA GACGGGGTTC AAAGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	DBA/2J	LG/J	NZB/BlNJ	SM/J	SPRET/EiJ
ss20412068	PS02178553	PERLEGEN	MM_PANEL	f	SNP	C	G	C	C	C	C		C		C
ss144503831	ENSMUSSNP1481842	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G				C
ss321695452	CHEV_5_134788005	CHEVERUD	SCREENING_POP	f	SNP							G		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	DBA/2J	LG/J	NZB/BlNJ	SM/J	SPRET/EiJ
rs13496588					SNP	C	G	C	C	C	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134340989 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16718	CpG island 16718			1258 bp proximal
Gm71761	predicted gene, 71761			1236 bp downstream
Gtf2i	general transcription factor II I			Intron
				mRNA-UTR
Rr399401	regulatory region 399401			1331 bp upstream
Rr621987	regulatory region 621987			within coordinates
Rr621988	regulatory region 621988			476 bp proximal
Rr621989	regulatory region 621989			1630 bp proximal
Tssr49086	transcription start site region 49086			1511 bp upstream
Tssr49087	transcription start site region 49087			1538 bp upstream
Tssr49088	transcription start site region 49088			1844 bp upstream
Tssr53628	transcription start site region 53628			410 bp downstream
Tssr53629	transcription start site region 53629			1080 bp downstream
Tssr53630	transcription start site region 53630			1652 bp downstream