rs13492944 SNP Detail

Summary

• ID
  rs13492944
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192342559 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TCTAATTCCA GAAGATCTAG
  TGCCCTCTTC TGGCCTCTCT GGGCACCAGG CACAAACATT GTTTACATAA TACAGGCATG
  CAGGCAAAAT ATACATACAA AATAAAAAAG AAAACTTTCC TATGTTTTCT AAATTTTTCA
  TAGTGATCAT CATTTTTTTA AATAATATTA AAAAATAATT GAGATGCCTG TCAAAAACTT
  W
  GGAGGGAATA ATAGTCGCTG AGGAGTCACT GTAAACGAAA GGCTGTGAGG GAAGCAACTA
  TCACTGGCTG GTTTTTCTTT CTGTAAACAT CAGCTCATGT TTATGGATTT GTTAAATTCT
  AGTCATTGTG GCTTCTGTGC ATGTCATGTG ATGGTTCAGC TTGTCCCAAG GCATGACCCT
  CCCCCACTTT TAAGATACTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20408343	PS02190030	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13492944					SNP	A	A	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192342559 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426372	regulatory region 426372			164 bp proximal
Rr426373	regulatory region 426373			1313 bp proximal