rs13486746 SNP Detail

Summary

• ID
  rs13486746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134682709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGCCACC TCCTGTGCAT
  CAGCAATACA GGCTTGAATC ACCACCGTGA CCAAAGGCTT CTTCTATGCT AGGGTAGCAC
  TCTACCGAGA CACACTGCTA GCATTTTCCC CTTTATGCTT GAACAGTGCG CCATGTAGCT
  GTCTGGCCAC CAACTCACTA TGTAGCTGAG GATGACCTGG ACCGTCTGAG CTTCCTACTT
  Y
  TACCTACAGG CTTCACTGCA GGATTACGCA GGTCCCACCA CCGGCTTCCT CTCCAGGAAA
  CCAGTAAAGT AAATCCTCTC TTAGGGTGAT TTTGCCAACT GTGCTTGGTA GTTTTATATT
  AATTTGATGT AGCTTAGAGT TGTAAGAGAG GAGGGAACTC CAATGGAGGA AATGCCTTCA
  TTCAAGCAGC AAGGCTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ
ss20402065	PS02179425	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ
rs13486746					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134682709 () rs orientation: forward

Symbol	Name	Function Class
Rr622116	regulatory region 622116	1333 bp distal
Rr622117	regulatory region 622117	539 bp proximal
Rr622118	regulatory region 622118	1004 bp proximal