rs13486234 SNP Detail

Summary

• ID
  rs13486234
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134345070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTAACA ATATTTACAC
  CCTTCGTTTC CTTTCCTAAT CCGATTGTGA CTCAACTCTG TCGACTCTGT CCAGGGCTAT
  TCATTAAGTT GTCAAAAGAA CAACTTGCTC TTTGCCCCCG GATTTCACTG CTCTTTGGAA
  TATTTAACCA GATTCCATAA GACCGAAACA GGAGTCCTAC TCCTTTGCAG CAGGGGCTAC
  R
  TTCTAAGATG CATGCCTGAA ATTAAATCAC TCCAAACTTT TTTCCCTACA TATGCTTAGG
  ATGAAAGTTC TGCAAGGTCC TGGGATGCAC ACCTGACATT CCAACACTTG GGAGGATATG
  AGCTGGAGAA GAGACTGTCC AAGTAGGGAA TTCATGTCAG CCAGGGCTAG GAGATAAGAC
  CATGTTTCTC AAAACAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
ss20401548	PS02178559	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
rs13486234					SNP	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134345070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16718	CpG island 16718	1058 bp distal
Gm71534	predicted gene, 71534	552 bp downstream
Gtf2i	general transcription factor II I	mRNA-UTR
Rr378666	regulatory region 378666	within coordinates
Rr621989	regulatory region 621989	1951 bp distal
Rr621990	regulatory region 621990	1404 bp distal
Rr621991	regulatory region 621991	within coordinates
Rr621992	regulatory region 621992	472 bp distal
Tssr1657	transcription start site region 1657	1258 bp upstream
Tssr49089	transcription start site region 49089	1224 bp downstream
Tssr53631	transcription start site region 53631	1792 bp upstream
Tssr53632	transcription start site region 53632	1764 bp upstream
Tssr53633	transcription start site region 53633	1743 bp upstream
Tssr53634	transcription start site region 53634	1717 bp upstream
Tssr53635	transcription start site region 53635	1668 bp upstream
Tssr53636	transcription start site region 53636	1645 bp upstream
Tssr53637	transcription start site region 53637	1540 bp upstream
Tssr53638	transcription start site region 53638	1495 bp upstream