rs13486233 SNP Detail

Summary

• ID
  rs13486233
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134344428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAT GCAAAAGTTA AAAAAGCCCG
  W
  GTCTGAAGAA CTTAGCTGTT AATGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	LG/J	NZB/BlNJ	SM/J	SPRET/EiJ
ss20401547	PS02178557	PERLEGEN	MM_PANEL	f	SNP		A	T	T	T	A	A	A		A		A		T
ss45739526	mCV23023561	ABI	CRAMUS_MOUSE	f	SNP	A	A		T					A
ss144503854	ENSMUSSNP365221	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		T
ss321695461	CHEV_5_134791444	CHEVERUD	SCREENING_POP	f	SNP											T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	LG/J	NZB/BlNJ	SM/J	SPRET/EiJ
rs13486233					SNP	A	A	T	T	T	A	A	A	A	A	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134344428 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16718	CpG island 16718	416 bp distal
Gm71534	predicted gene, 71534	within coordinates
Gm71761	predicted gene, 71761	1799 bp upstream
Gtf2i	general transcription factor II I	mRNA-UTR
Rr378666	regulatory region 378666	within coordinates
Rr399401	regulatory region 399401	1807 bp downstream
Rr621988	regulatory region 621988	1810 bp distal
Rr621989	regulatory region 621989	1309 bp distal
Rr621990	regulatory region 621990	762 bp distal
Rr621991	regulatory region 621991	within coordinates
Rr621992	regulatory region 621992	149 bp proximal
Tssr1657	transcription start site region 1657	616 bp upstream
Tssr49086	transcription start site region 49086	1910 bp downstream
Tssr49087	transcription start site region 49087	1878 bp downstream
Tssr49088	transcription start site region 49088	1583 bp downstream
Tssr49089	transcription start site region 49089	582 bp downstream
Tssr53630	transcription start site region 53630	1754 bp upstream
Tssr53631	transcription start site region 53631	1150 bp upstream
Tssr53632	transcription start site region 53632	1122 bp upstream
Tssr53633	transcription start site region 53633	1101 bp upstream
Tssr53634	transcription start site region 53634	1075 bp upstream
Tssr53635	transcription start site region 53635	1026 bp upstream
Tssr53636	transcription start site region 53636	1003 bp upstream
Tssr53637	transcription start site region 53637	898 bp upstream
Tssr53638	transcription start site region 53638	853 bp upstream