rs13486232 SNP Detail

Summary

• ID
  rs13486232
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134344269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCCTGATT TGCAGAGGGA
  GGTCCCCCCA GCTCCGGGAC ACAAAGAACT CAATGTTTTC AAAGCTGGCT TTAGAAGCAA
  CCAGAGTGGA CTTGCCCAAA CTTGGGACAG GCAACGGATG GGAGGGGGTG AGGAACTCGT
  GATTTCCATT TCTTCTCTCT TCGAGTCTTT ACACAGCTCC ACATTTAGAA GGAGAATTGA
  M
  GAAATCCTGA TCGTCCCCAC AGCTACAAAG AAAGTAAACT TAAGACCCTC CTCCGGCCAT
  TATATTTATT TTTCTCAACT ACTTCATAAG ATCAATGACT TTCGAAGAGT ATCAACTAAC
  TGTTCATCTA AGTTAAATGC AAAAGTTAAA AAAGCCCGAG TCTGAAGAAC TTAGCTGTTA
  ATGCAAAGGA CAGAATTGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
ss20401546	PS02178556	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
rs13486232					SNP	A	A	A	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134344269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16718	CpG island 16718	257 bp distal
Gm71534	predicted gene, 71534	within coordinates
Gm71761	predicted gene, 71761	1640 bp upstream
Gtf2i	general transcription factor II I	mRNA-UTR
Rr378666	regulatory region 378666	within coordinates
Rr399401	regulatory region 399401	1648 bp downstream
Rr621988	regulatory region 621988	1651 bp distal
Rr621989	regulatory region 621989	1150 bp distal
Rr621990	regulatory region 621990	603 bp distal
Rr621991	regulatory region 621991	within coordinates
Rr621992	regulatory region 621992	308 bp proximal
Tssr1657	transcription start site region 1657	457 bp upstream
Tssr49086	transcription start site region 49086	1751 bp downstream
Tssr49087	transcription start site region 49087	1719 bp downstream
Tssr49088	transcription start site region 49088	1424 bp downstream
Tssr49089	transcription start site region 49089	423 bp downstream
Tssr53630	transcription start site region 53630	1595 bp upstream
Tssr53631	transcription start site region 53631	991 bp upstream
Tssr53632	transcription start site region 53632	963 bp upstream
Tssr53633	transcription start site region 53633	942 bp upstream
Tssr53634	transcription start site region 53634	916 bp upstream
Tssr53635	transcription start site region 53635	867 bp upstream
Tssr53636	transcription start site region 53636	844 bp upstream
Tssr53637	transcription start site region 53637	739 bp upstream
Tssr53638	transcription start site region 53638	694 bp upstream