rs13486231 SNP Detail

Summary

• ID
  rs13486231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134341316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAA AAGAAAGGCC TTACGGAAAT
  R
  ACTGCGGACA GAAAGTTTTT TGTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	DBA/2J	LG/J	NZB/BlNJ	SM/J
ss20401545	PS02178554	PERLEGEN	MM_PANEL	f	SNP	G	A	A	A	G	G	G	G		G
ss45750570	mCV23023573	ABI	CRAMUS_MOUSE	f	SNP	G		A					G
ss144503834	ENSMUSSNP5103224	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A					G
ss321695453	CHEV_5_134788332	CHEVERUD	SCREENING_POP	f	SNP									A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	DBA/2J	LG/J	NZB/BlNJ	SM/J
rs13486231					SNP	G	A	A	A	G	G	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134341316 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16718	CpG island 16718			931 bp proximal
Gm71761	predicted gene, 71761			909 bp downstream
Gtf2i	general transcription factor II I			Intron
				mRNA-UTR
Rr399401	regulatory region 399401			1004 bp upstream
Rr621987	regulatory region 621987			95 bp distal
Rr621988	regulatory region 621988			149 bp proximal
Rr621989	regulatory region 621989			1303 bp proximal
Tssr49086	transcription start site region 49086			1184 bp upstream
Tssr49087	transcription start site region 49087			1211 bp upstream
Tssr49088	transcription start site region 49088			1517 bp upstream
Tssr53628	transcription start site region 53628			83 bp downstream
Tssr53629	transcription start site region 53629			753 bp downstream
Tssr53630	transcription start site region 53630			1325 bp downstream
Tssr53631	transcription start site region 53631			1944 bp downstream
Tssr53632	transcription start site region 53632			1981 bp downstream
Tssr53633	transcription start site region 53633			1994 bp downstream