rs13486230 SNP Detail

Summary

• ID
  rs13486230
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134340884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTCGAGG CCAGCCTGGT
  CTACAGAGTG AGTTCCAGGT CAGCCAAGGG CTACACAGAG AAACCCTGTC TCGAAAAACC
  AAAAAAAAAA AAAAACACAC ACACACACAA CCAAACCCAG CGGCCACCGC ACTATATTGC
  AGACACCTGG CAGAGGGCCT GCAGACCTGA ACAGGACCAA ACCAGAGTTT ACCACCTAAA
  W
  AGAAAGGAAC AAAGGCAGAA CCTCCCTCCC TCCCCAGAGG TTCACCATCC ATCCCAGCTG
  TACAAGCAAT TGAGAGACAG GGGAATTACC AAATTCAAAG AGGACCTGGG CTACAGACGG
  GGTTCAAAGC CAACCTGTGC AACTTAGTGA AACTATTTCA AATAGTAATG GGGCGGGGAG
  GTGAAGGGTG AAAGCTGACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
ss20401544	PS02178552	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
rs13486230					SNP	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134340884 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16718	CpG island 16718			1363 bp proximal
Gm71761	predicted gene, 71761			1341 bp downstream
Gtf2i	general transcription factor II I			Intron
				mRNA-UTR
Rr399401	regulatory region 399401			1436 bp upstream
Rr621987	regulatory region 621987			within coordinates
Rr621988	regulatory region 621988			581 bp proximal
Rr621989	regulatory region 621989			1735 bp proximal
Tssr49086	transcription start site region 49086			1616 bp upstream
Tssr49087	transcription start site region 49087			1643 bp upstream
Tssr49088	transcription start site region 49088			1949 bp upstream
Tssr53628	transcription start site region 53628			515 bp downstream
Tssr53629	transcription start site region 53629			1185 bp downstream
Tssr53630	transcription start site region 53630			1757 bp downstream