rs13486229 SNP Detail

Summary

• ID
  rs13486229
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134340825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGTGGGGG CGCACGCCTT
  TAATTCCAGC ACTTGGGAAG CAGAAGAAGG CAGATTTCTG AGTTCGAGGC CAGCCTGGTC
  TACAGAGTGA GTTCCAGGTC AGCCAAGGGC TACACAGAGA AACCCTGTCT CGAAAAACCA
  AAAAAAAAAA AAAACACACA CACACACAAC CAAACCCAGC GGCCACCGCA CTATATTGCA
  V
  ACACCTGGCA GAGGGCCTGC AGACCTGAAC AGGACCAAAC CAGAGTTTAC CACCTAAATA
  GAAAGGAACA AAGGCAGAAC CTCCCTCCCT CCCCAGAGGT TCACCATCCA TCCCAGCTGT
  ACAAGCAATT GAGAGACAGG GGAATTACCA AATTCAAAGA GGACCTGGGC TACAGACGGG
  GTTCAAAGCC AACCTGTGCA                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	NZB/BlNJ	SPRET/EiJ
ss20401543	PS02178551	PERLEGEN	MM_PANEL	f	SNP	C	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	NZB/BlNJ	SPRET/EiJ
rs13486229					SNP	C	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134340825 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16718	CpG island 16718			1422 bp proximal
Gm71761	predicted gene, 71761			1400 bp downstream
Gtf2i	general transcription factor II I			Intron
				mRNA-UTR
Rr399401	regulatory region 399401			1495 bp upstream
Rr621987	regulatory region 621987			within coordinates
Rr621988	regulatory region 621988			640 bp proximal
Rr621989	regulatory region 621989			1794 bp proximal
Tssr49086	transcription start site region 49086			1675 bp upstream
Tssr49087	transcription start site region 49087			1702 bp upstream
Tssr53628	transcription start site region 53628			574 bp downstream
Tssr53629	transcription start site region 53629			1244 bp downstream
Tssr53630	transcription start site region 53630			1816 bp downstream