rs13482239 SNP Detail

Summary

• ID
  rs13482239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70005232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTAGGAG TGAGGGGACA
  GCCATCCTTC GTGGCTTTTG GGAGCTGAAG CCGCAGGGTT TCGGATGAGC TGACACCATG
  GAGCCTCCAG GACCCAGCAC GCCCACAGCC TCTGCCGCTG CCCGGGCAGA TCACTACACC
  CCAGGCCTCC GGCCACTCCC GAAGCGCAGA CTTCTATATA GCTTTGCGTT GCTGCTTGCT
  R
  TGCTACAGGT GAGTGTGGCG CGACTGCGGT GCCCGAAGTG GGAAGCCGGC CAGGAAAGGA
  AATGGCAAGG AAATGTCCTG AGAGCCGGGC GCGCACGTGC GTGTGGTGGG AGAGGTCTGA
  CACTGCGGGG GGTGGGGGGG ACACGACTCC GCGGGGGTCC AGGTAGGCCT CAACAGGGAA
  GCCTAGAAGG TTCGATGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16381090	14.060.218	TWGNF	TWGNF-Mouse-2	f	SNP	A	A	G	G	G	A	G	G	G	G	G	A	A	G	A	G	G	A	G	G	A	G	G	A	A	G	A	G	A	A	A	G	G	G	G	A	G	A	G	G	A	G	G	A	A	G	A	A
ss39271374	mCV22654180	ABI	CRAMUS_MOUSE	f	SNP		A	G																	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13482239					SNP	A	A	G	G	G	A	G	G	G	G	G	A	A	G	A	G	G	A	G	G	A	G	G	A	A	G	A	G	A	A	A	G	G	G	G	A	G	A	G	G	A	G	G	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70005232 () rs orientation: forward

Symbol	Name	Function Class
4930480K23Rik	RIKEN cDNA 4930480K23 gene	670 bp downstream
Rr494753	regulatory region 494753	301 bp distal
Tnfrsf10b	tumor necrosis factor receptor superfamily, member 10b	Coding-NonSynonymous
Tssr126375	transcription start site region 126375	257 bp downstream
Tssr126376	transcription start site region 126376	230 bp downstream