rs13481010 SNP Detail

Summary

• ID
  rs13481010
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:46708485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGATGGGA AGGGAAAGAT
  CTTGGATTTG TTTGTGGTGT ATCCCACCCT TATCTCTACT TGGTGACCGA TGCATCTTCT
  GTTGGTTACA GCCACAACAA CCAAAAAACC AACAACAACC ACCCGGCCAA CCACCACCCC
  TTATGTGACC ACCACCACCC CAGAGCTGCT TCCAACAACA GTCATGACCA CATCTGTTCT
  Y
  CCAACCACCA CACCACCCCA GACACTAGCC ACCACTGCCT TCAGTACAGC AGTGACCACG
  TGCCCCTCAA CAACACCTGG CTCCTTCTCA CAAGAAACCA CAAAAGGGTC CGCCTTCACT
  ACAGGTGAGG ATTGTCTGCT GTTTTCCTTC TGTTTGTCAG ATATGGTGTG GTTTCCTTGA
  AACAGGACTC TTCTACAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16379490	11.047.346	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	T	T	T	C	T	C	C	C	C	C	C	C	T	T	C	T	C	C	C	C	T	T	T	C	C	C	C	T	T	C	T	C	T	C	T	C	C	T	T	C	T	C	C	T
ss38741952	mCV25344026	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C											C
ss132104546	ENSMUSSNP204415	ENSEMBL	ENSEMBL_Sanger	f	SNP			T																C
ss323660823	CHEV_11_46631160	CHEVERUD	SCREENING_POP	f	SNP																								T																	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13481010					SNP	T	T	T	T	T	C	T	C	C	C	C	C	C	C	T	T	C	T	C	C	C	C	T	T	T	C	C	C	C	T	T	C	T	C	T	C	T	C	C	T	T	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:46708485 () rs orientation: forward

Symbol	Name	Function Class
Timd4	T cell immunoglobulin and mucin domain containing 4	Coding-Synonymous
Tssr101130	transcription start site region 101130	1949 bp downstream
Tssr101131	transcription start site region 101131	1920 bp downstream
Tssr101132	transcription start site region 101132	94 bp downstream
Tssr101133	transcription start site region 101133	68 bp downstream