About   Help   FAQ
rs13479548 SNP Detail
Summary
  • ID
    rs13479548
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:135721938 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGAAACCTGT CTCTAGAGCT
    GTATCCCCAC TCAGCACCTT AGATGACCAT ACAATCATAG CTGTGCTCCT TGTGTAAATA
    CCCAGAAAGT TTACTTTCTT ATAAACACAC ACACCCAAAA CACATGCACA TGAGAGCATC
    CCTGCATCCG ACCTTACACG GGATCCCATC TCTTCACGAT AGCCTGTGAT TACCCACAGT
    R
    CCTTCAGCAG TTTGTCTTTG TGTTTGTTTT TTTATTGTTT TCTTTTGTTT TGTTTTGTTT
    TGTTTTTCCT TTTCAACATT GAGAACATCC ATCTATGTGT CTTTGTGGAC TTCTAACTGT
    AGAATAAACT CCTGAAAGTG GAACTGATGG GCTAATTTCA TTTGAGAATA GTAATCCTAT
    TTTTATAATC CTTTTAATCC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
C57BL/10J
C57BLKS/J
C57L/J
CAST/EiJ
DBA/2J
DDK/Pas
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SEG/Pas
SPRET/EiJ
WSB/EiJ
ZALENDE/EiJ
ss16377681 07.125.058 TWGNF TWGNF-Mouse-2 f SNP G A G G G G G G G G
ss45997074 mCV24311289 ABI CRAMUS_MOUSE f SNP G G A G G
ss47310499 NES11528797 PERLEGEN MM_PANEL2 f SNP G A G G G G G G G G G G G G G
ss145951413 ENSMUSSNP2204782 ENSEMBL ENSEMBL_Sanger f SNP G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
C57BL/10J
C57BLKS/J
C57L/J
CAST/EiJ
DBA/2J
DDK/Pas
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SEG/Pas
SPRET/EiJ
WSB/EiJ
ZALENDE/EiJ
rs13479548 SNP G G A G G G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47310499 NES11528797 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:135721938 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D7Mit290 DNA segment, Chr 7, Massachusetts Institute of Technology 290 826 bp distal
Rr381537 regulatory region 381537 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/25/2025
MGI 6.24
The Jackson Laboratory