rs13478865 SNP Detail

Summary

• ID
  rs13478865
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83995915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTC GTGACTTTAG CAACTTTCTC
  M
  ACCTTGGAGG GTGAAGAGTG CAAAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16376806	06.084.484	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	C	C	C	C	C	A	A	A	A	C	C	C	C	A	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
ss45905365	mCV23451666	ABI	CRAMUS_MOUSE	f	SNP	C	C	C						A											A
ss60905565	NES15954302	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C			A							C					A		C			C							C			C										C
ss133350695	ENSMUSSNP6965767	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C																	A
ss321844859	CHEV_6_83968927	CHEVERUD	SCREENING_POP	f	SNP																										C																A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13478865					SNP	C	C	C	C	C	C	C	A	A	A	A	C	C	C	C	A	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60905565	NES15954302	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83995915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17623	CpG island 17623	12 bp proximal
Dysf	dysferlin	Intron
Rr632975	regulatory region 632975	1211 bp distal
Rr632976	regulatory region 632976	1324 bp distal
Rr632977	regulatory region 632977	within coordinates
Rr632978	regulatory region 632978	100 bp proximal
Rr632979	regulatory region 632979	1036 bp proximal
Tssr1912	transcription start site region 1912	461 bp upstream
Tssr57398	transcription start site region 57398	413 bp upstream
Tssr57399	transcription start site region 57399	431 bp upstream