rs13478816 SNP Detail

Summary

• ID
  rs13478816
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72360182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTA TTTAGTATCC CACATTTTTG
  W
  CTCTCAACCC ATCCCTTTCC TCACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16376747	06.072.849	TWGNF	TWGNF-Mouse-2	f	SNP	A	A	A	T	A	A	A	T	A	A	A	A	A	T	T	T	A	T	T	T	T	A	A	T	T	T	A	T	T	T	T	T	A	A		T	T	T		A	A	T	A	T	T	A	A	T	T
ss45965587	mCV24087196	ABI	CRAMUS_MOUSE	f	SNP		A	T						A											T
ss47979248	NES11920377	PERLEGEN	MM_PANEL2	f	SNP	A			T	A	A		T							A					T		A								T		T			A				T									T
ss321821611	CHEV_6_72333193	CHEVERUD	SCREENING_POP	f	SNP																										T																		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13478816					SNP	A	A	?	T	A	A	A	T	A	A	A	A	A	T	?	T	A	T	T	T	T	A	A	T	T	T	A	T	T	T	T	T	A	A	A	T	T	T	T	A	A	T	A	T	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47979248	NES11920377	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72360182 () rs orientation: forward

Symbol	Name	Function Class
Gm52494	predicted gene, 52494	within coordinates
Rr632160	regulatory region 632160	180 bp proximal
Rr632161	regulatory region 632161	281 bp proximal
Rr632162	regulatory region 632162	1638 bp proximal
Tssr61449	transcription start site region 61449	1494 bp upstream
Tssr61450	transcription start site region 61450	1440 bp upstream