rs13478770 SNP Detail

Summary

• ID
  rs13478770
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:56022218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGGAAGG GCAGTGAGAC
  AGTACAAAGG AGGTGATGAG GATAAATCAA AGATCATGTC TGCATTCAGT GTCTTTTTGA
  TGCTCTTTAT TGAGAGAGAA CGCCCATTAC GGATCATGTT AGACAGATAA GACTAAGGCG
  CAGAGAATCT AAGCAACTTG CCCATGTTTG CTGAGGAAAG AAGCATTTAT TCTATAATTG
  R
  GTCCTAGGGT TTTGCTTGTG AATCCTCACA CATTACCGTT TATAGTCCCA CCTTTCTGAA
  ATACAGTAGT AGTCTACTGT GGGTCCTCAT TTCCTTAAAA CAAAACAAAA CTATTCAGAT
  CCTAGCTGTT TAAATGTGTC TTGAACACAT AAAATTGTTT TTGGTATTAT AGAAACAATA
  GAAATACACC ACCACTGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16376690	06.056.105	TWGNF	TWGNF-Mouse-2	f	SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	A	G	A	G	A	A	A	G	G	A	A	G	G	A		G	G	G	G	G	G	G	G	G	G
ss45907570	mCV24833536	ABI	CRAMUS_MOUSE	f	SNP	A	A	G						G
ss47922944	NES11661898	PERLEGEN	MM_PANEL2	f	SNP	A		G	G		G		G							G					G		G			A					A		G			A				A									G
ss133220319	ENSMUSSNP2652717	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13478770					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	A	G	A	G	A	A	A	G	G	A	A	G	G	A	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922944	NES11661898	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56022218 () rs orientation: forward

Symbol	Name	Function Class
Rr631042	regulatory region 631042	152 bp distal