rs13478592 SNP Detail

Summary

• ID
  rs13478592
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:149334371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT GGAGTCTCAT GCCAGCTTAC
  M
  GAGAGCAGAG ACTCAGTCAA TGTAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16376472	05.147.302	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	A	C	A	C	A	C	C	C	C	C	C	C	C	A	C	C	C	C	A	A	C	C	C	A	C	C	A	A	C		C	C	C		A	A	C	C	C	A	A	A
ss45776727	mCV23838569	ABI	CRAMUS_MOUSE	f	SNP		C	A					C											C
ss51207788	NES13811511	PERLEGEN	MM_PANEL2	f	SNP	C		A		A	C	A							C					C		A			C			C		A			C				C							A
ss144701047	ENSMUSSNP6158969	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A																C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13478592					SNP	C	C	A	C	A	C	A	C	C	C	C	C	C	C	C	A	C	C	C	C	A	A	C	C	C	A	C	C	A	A	C	C	C	C	C	C	A	A	C	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51207788	NES13811511	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149334371 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17095	CpG island 17095	700 bp proximal
Gm20488	predicted gene 20488	within coordinates
Medag	mesenteric estrogen dependent adipogenesis	843 bp upstream
Rr625496	regulatory region 625496	353 bp proximal
Tssr49905	transcription start site region 49905	885 bp upstream
Tssr49906	transcription start site region 49906	1192 bp upstream