rs13478015 SNP Detail

Summary

• ID
  rs13478015
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138882572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT CATGCGGGGC TCATGGGTTA
  R
  ACGTAAAACT TGACAGTTGC GACCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16375721	04.137.224	TWGNF	TWGNF-Mouse-2	f	SNP	G	G	G	A	A	G	A	A	G	G	A	G	G	G	G	A	A	G	A	A	A	A	A	G	A	A	G	A	G	G	G	G	G	A	A	A	A	A		A	G	G	A	A	G	A	A	A	A
ss37765720	NES09137522	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A	G		A							G					A		A			A					G		G			A				A									A
ss45703156	mCV23290650	ABI	CRAMUS_MOUSE	f	SNP	G	G	G						G											A
ss147666681	ENSMUSSNP142411	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G																	A
ss321379848	CHEV_4_138711176	CHEVERUD	SCREENING_POP	f	SNP																										A																		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13478015					SNP	G	G	G	A	A	G	A	A	G	G	A	G	G	G	G	A	A	G	A	A	A	A	A	G	A	A	G	A	G	G	G	G	G	A	A	A	A	A	A	A	G	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37765720	NES09137522	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138882572 () rs orientation: forward

Symbol	Name	Function Class
Gm33304	predicted gene, 33304	within coordinates
Rr603122	regulatory region 603122	431 bp distal
Rr603123	regulatory region 603123	41 bp distal