rs13478005 SNP Detail

Summary

• ID
  rs13478005
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137182718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG CTGGTGGTGA CATGGATGCC
  R
  CCTTTGTCCA GTGGGCACAT GGCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BUB/BnJ	C3H/HeJ	C57BL/6J	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	LG/J	SM/J	WSB/EiJ
ss16375708	04.135.517	TWGNF	TWGNF-Mouse-2	f	SNP	A		G	G	G	G		G	G	G	G	G			G
ss45702607	mCV22550207	ABI	CRAMUS_MOUSE	f	SNP		A	G				A			G
ss147607074	ENSMUSSNP1905247	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							G
ss321364036	CHEV_4_137011322	CHEVERUD	SCREENING_POP	f	SNP													G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BUB/BnJ	C3H/HeJ	C57BL/6J	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	LG/J	SM/J	WSB/EiJ
rs13478005					SNP	A	A	G	G	G	G	A	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137182718 () rs orientation: forward

Symbol	Name	Function Class
1700013G24Rik	RIKEN cDNA 1700013G24 gene	mRNA-UTR
Gm13010	predicted gene 13010	within coordinates
Rr602623	regulatory region 602623	1939 bp proximal
Tssr39748	transcription start site region 39748	801 bp downstream
Tssr39749	transcription start site region 39749	635 bp downstream
Tssr39750	transcription start site region 39750	623 bp downstream