rs13477903 SNP Detail

Summary

• ID
  rs13477903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108705354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAC TACATCAAGG GCTTCCGCTA
  Y
  GAGCTGTACT GCCTCGCCCG GGCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16375571	04.106.846	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	T	T	T	C	T	T	C	C	C	C	C	C	C	T	T	C	C	C	C	T	C	C	C	T	T	C	C	C	C	T	C	C	C	C	T	C		C	T	C	T	T	C	C	T	C	C
ss38279770	NES09493365	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C		T							C					C		T			C					C		T			C				C									C
ss45718171	mCV23912267	ABI	CRAMUS_MOUSE	f	SNP		T	T						C											C
ss147191567	ENSMUSSNP2065541	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss321252969	CHEV_4_108520762	CHEVERUD	SCREENING_POP	f	SNP																										T																		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13477903					SNP	T	T	T	T	T	C	T	T	C	C	C	C	C	C	C	T	T	C	C	C	C	T	C	C	C	T	T	C	C	C	C	T	C	C	C	C	T	C	C	C	T	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38279770	NES09493365	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108705354 () rs orientation: forward

Symbol	Name	Function Class
A730015C16Rik	RIKEN cDNA A730015C16 gene	within coordinates
Cpgi14566	CpG island 14566	within coordinates
Kti12	KTI12 homolog, chromatin associated	Coding-Synonymous
Rr398384	regulatory region 398384	187 bp downstream
Rr597229	regulatory region 597229	1701 bp distal
Rr597230	regulatory region 597230	362 bp distal
Tssr38317	transcription start site region 38317	262 bp downstream
Tssr38318	transcription start site region 38318	232 bp downstream
Tssr42741	transcription start site region 42741	199 bp downstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	Intron