rs13477495 SNP Detail

Summary

• ID
  rs13477495
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151773154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGATGCC ACAGGGGCAG
  CACCTCCCCA CAGAAATGAG GAGGGTGTCA GAGAAATGGG GGCTCACCCT CCCGGTGTCA
  GCAAGGCCGA GCGAATCTCC CTTCACGTAC ACTACTGTAG CTGGCCCGGT GTTCCCTTAA
  ACAAGTTTCT AGAAGTGGGA CAGAGTCGGA GCAAAGGGCA GCTCTGAGCC TTTTCATCCA
  Y
  GTTATCAATC AGCAGACAGC GCACAGATCT CCGTTCCCTA CAGCAGTGGA GGAGGGCAGC
  CATTCCTTCA CACTGGGCTG GGCTGACCGG GTTAGATGAT GCCTCCTTAT TGGTTCAGTT
  GGAATTCTGT ACCATTGAGG TCAACGCGCT TTCCACATGG TGTGCCCACT CATACACTCC
  CTGGCTAGTT TTCTTTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16375064	03.152.763	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	T	C	T	T	C	T	C	C	C	C	C	C		T	T	T	T	C	T	C	T	T	T	T	T	C	T	T	T	C	T	C	C	T	T	T		T	T	C	C	T	C	T	C	C	C
ss45435899	mCV24211733	ABI	CRAMUS_MOUSE	f	SNP		T	T						C											C
ss51060924	NES13431234	PERLEGEN	MM_PANEL2	f	SNP	T		T	C		T									C					C		C			T					T		C			C				T									C
ss136100496	ENSMUSSNP7037374	ENSEMBL	ENSEMBL_Sanger	f	SNP		T																		C											T
ss321027910	CHEV_3_151730481	CHEVERUD	SCREENING_POP	f	SNP																										T																		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13477495					SNP	T	T	T	C	T	T	C	T	C	C	C	C	C	C	C	T	T	T	T	C	T	C	T	T	T	T	T	C	T	T	T	C	T	C	C	T	T	T	T	T	T	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060924	NES13431234	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151773154 () rs orientation: forward

Symbol	Name	Function Class
Gm64437	predicted gene, 64437	369 bp upstream
Rr587440	regulatory region 587440	577 bp distal
Rr587441	regulatory region 587441	651 bp distal