rs13477417 SNP Detail

Summary

• ID
  rs13477417
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133456410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCCAAGG AAGCAGGAGA
  TGAGAAAGCA TTCTCATCAA TCTAGGCCAG AGAATTAGCA GGGCAGGAGC ATTAACATGC
  TTTATATATA ACTGAAGTTG AAGACTCTCT AAATAAACAA TTAATTTCAC TTTAATTAAA
  GAACCAAGTG GGGTATATGG GTATAGCTCA GTGGCATATA CAACCTTTGT TTTACATGCG
  R
  AGCTCCTAAG TTTGGTCTCT AGCATTGTGA GAAATCCAAA CACAAATGAA CTGAAAGTTA
  GTCAATAATG GTACAAAGAG GCTGGCTTCA TCCGCCTATG TCCTGGAGTT CTTGTTCATG
  GACGACAGGT TTTGCTCCTT GTACAACTTG CCTTGAGCCA ATGATTTATG TAGACAGTAT
  AACCATGGGC AAGCATGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	CAST/EiJ	CZECHII/EiJ	DBA/1J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16374972	03.134.367	TWGNF	TWGNF-Mouse-2	f	SNP	G	G	A	A	A	A	A		A	A	A	G	G	A	A	A	A	G	G	A	G	A	G	G	G	A	A	G	G	A	A	G	G	G	G	A	A	G	A	A	G	G
ss45504247	mCV23615500	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A
ss135918907	ENSMUSSNP405859	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	CAST/EiJ	CZECHII/EiJ	DBA/1J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13477417					SNP	G	G	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	G	G	A	G	A	G	G	G	A	A	G	G	A	A	G	G	G	G	A	A	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133456410 () rs orientation: forward

Symbol	Name	Function Class
Gm64379	predicted gene, 64379	1095 bp upstream
Rr398038	regulatory region 398038	1192 bp downstream
Rr585594	regulatory region 585594	1122 bp distal
Rr585595	regulatory region 585595	1021 bp distal
Rr585596	regulatory region 585596	448 bp proximal
Tssr35771	transcription start site region 35771	1108 bp upstream