rs13477403 SNP Detail

Summary

• ID
  rs13477403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129923939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAT CATCCTGATA AAGTGATTTA
  Y
  GATTTATGTT CCTTTGATCT GCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16374957	03.130.779	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	C	T	C	C	T	T	C	C	C	T	T	T	C	C	T	C	T	T	T	T	C	T	T	T	T	C		C	T	T	T	T	C	T	C		C	C	C	T	T	C	C	T	T	C
ss45473067	mCV23984614	ABI	CRAMUS_MOUSE	f	SNP	T	T	C						C											T
ss46970191	NES10877483	PERLEGEN	MM_PANEL2	f	SNP	T		C		C	C									C					T	T								C		T							C									T
ss135892070	ENSMUSSNP992868	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C																	T
ss320964382	CHEV_3_129833208	CHEVERUD	SCREENING_POP	f	SNP																									T																		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13477403					SNP	T	T	C	T	C	C	T	T	C	C	C	T	T	T	C	C	T	C	T	T	T	T	C	T	T	T	T	C	C	C	T	T	T	T	C	T	C	C	C	C	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46970191	NES10877483	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129923939 () rs orientation: forward

Symbol	Name	Function Class
4930502M04Rik	RIKEN cDNA 4930502M04 gene	1211 bp upstream
Rr585137	regulatory region 585137	1341 bp distal
Rr585138	regulatory region 585138	175 bp distal
Rr585139	regulatory region 585139	79 bp proximal