rs13477393 SNP Detail

Summary

• ID
  rs13477393
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127623520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAATCTAT TTAAGAAAAA
  AAAAGTGCAA ACCAGAATAG AAGATCTGAT TTTTTTTTCT AGCATGCTTA CAAGGGGAAA
  GCCTCAGTCC CTGTCTTCGT ATTTGTATAA TGTGAGGACA GATACTCGAT TCTTTGGGAA
  GAGATGGCGT TTCTTCGATA CAGATTTCAA ACAGTAGGAT TAAGAGAAAG AAAAGACACA
  S
  AGTTAGGAAA GCAGGTACGG GCCAAGCTTC TCGACTTCCA ATTAATTTCA TTTATGACGA
  TAATACATCA GGACCATTAG ACATCTCCCA CGTTCAGAGC CGTCCAAGTT CTTGGAGGTA
  TGACTTTTGG GCAAACAACA CGAGAAGATG GCAACAGTAA GTAAGTGCCA GGAGGCACGC
  AGGTCCCACC CACAGCAAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16374946	03.128.459	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	C	G	C	G	C	G	G	G	G	G	C	C	G	C	G	G	G	G	G	C	G	G	C	G	C	C	C	G	G	C	C	G	G	C	C	C	G	C	G	G	G	G
ss45410275	mCV23993971	ABI	CRAMUS_MOUSE	f	SNP		C	C					G										G
ss135872309	ENSMUSSNP6282776	ENSEMBL	ENSEMBL_Sanger	f	SNP			C															G
ss320957257	CHEV_3_127532789	CHEVERUD	SCREENING_POP	f	SNP																								G																C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13477393					SNP	C	C	C	G	C	G	C	G	G	G	G	G	C	C	G	C	G	G	G	G	G	C	G	G	C	G	C	C	C	G	G	C	C	G	G	C	C	C	G	C	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127623520 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	within coordinates
Rr584871	regulatory region 584871	348 bp proximal
Rr584872	regulatory region 584872	938 bp proximal