rs13477308 SNP Detail

Summary

• ID
  rs13477308
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105022892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTCTGAC TTAGAAGCAT
  CATACCTTGC AGCCTTGCCA TCAGATCCTA GGTATACTCC CTTCACCAGA GCTGAGAAAA
  GGACTCCCTG CCCAACTCAG CTAGGATTCC CTATGGCTCT GGCTCCTTCA CCAGCAAGTC
  TATCTATGGC ATTTGATCTT CCTGAGTTTG AGAGTTACTC CTTTCCAGTG AGCAAAGGAA
  Y
  TCTCAGACCA GTAGGGAGAG GCTATCAGAA AAGGAAGATG GGGAAAAGGC AGGGTAAGTG
  GATCTAAAGG AGTGCATGTA ATGGAGGTAA CACTGTAAGA GCTTTGCAAG TGGCTTCTGA
  AGGCCATTAG GAATCAGAGC TGAAGCATGC TCCAGCACAC CTGGGGATGG AGACTCTTTT
  CTCTGCCCTT TGCCTGTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16374840	03.105.439	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	T	T	T	C	C	T	C	C	T	C	C	C	T	T	T	T	T	C	C	T	T	C	T	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	C	C	T	T
ss45466552	mCV23173445	ABI	CRAMUS_MOUSE	f	SNP	C	C	T						C										T
ss135573393	ENSMUSSNP3863873	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T																T
ss320861445	CHEV_3_104918494	CHEVERUD	SCREENING_POP	f	SNP																									T																	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13477308					SNP	C	C	T	T	T	C	C	T	C	C	T	C	C	C	T	T	T	T	T	C	C	T	T	C	T	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105022892 () rs orientation: forward

Symbol	Name	Function Class
Gm40118	predicted gene, 40118	within coordinates
Rr582673	regulatory region 582673	935 bp distal
Rr582674	regulatory region 582674	1062 bp distal
Rr582675	regulatory region 582675	858 bp proximal