rs13477273 SNP Detail

Summary

• ID
  rs13477273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95950214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCGG TTGTTGTTTA TGCCCAGTAG
  Y
  TCATGGACCA TGGCCTGATA TGTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16374793	03.096.353	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	C	T	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	C	T	C	T	T	C	T	T	C	T	C	T	T	T	T	C	T	C	C	T	T	C	C	T
ss45528655	mCV22910041	ABI	CRAMUS_MOUSE	f	SNP	C	C	C						T										T
ss135513625	ENSMUSSNP995125	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C																T
ss320841397	CHEV_3_95846825	CHEVERUD	SCREENING_POP	f	SNP																									T																	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13477273					SNP	C	C	C	T	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	C	T	C	T	T	C	T	T	C	T	C	T	T	T	T	C	T	C	C	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95950214 () rs orientation: forward

Symbol	Name	Function Class
D3Umi26	DNA segment, Chr 3, University of Michigan 26	within coordinates
Rr581123	regulatory region 581123	1851 bp distal
Rr581124	regulatory region 581124	290 bp proximal
Rr581125	regulatory region 581125	1591 bp proximal
Vps45	vacuolar protein sorting 45	Coding-Synonymous