rs13477257 SNP Detail

Summary

• ID
  rs13477257
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90960560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAATTAT ACAGGTCAAT
  TGCGTATCAT GGCATAAGTA GAAAATATGC TCCATCTGCA GGCTGGAAAA AGGATTTCAC
  AGCTGCTTCT ACTGCCTTAT GTAATTTCTA TCCCTATGGA CTTTGGCAGC ACTAACTGCC
  TTTATGGTTT TGGCAGTACT ACAACTTAGA ACAGATATAA CACTTTAATT GCTGAAGAGA
  R
  ACCTGACTGT ATGTTGTGAG GCATCACACA GTGCAGTCCA GCTGAAGTTT CCTAATGAGT
  AGAATCTATT CATGAGTACA ACAGTGACTG AGGACTGATG GTCCCTAGAT AGAAAACACT
  TTAAATTTAT GAATACTGCA GACTACATTT CCAACCTTAG GAAGAAGCCC TACCTTGAGG
  AAATGTGGTG CTTCCTTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16374771	03.092.143	TWGNF	TWGNF-Mouse-2	f	SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G
ss45414401	mCV25162890	ABI	CRAMUS_MOUSE	f	SNP		G	A						G											G
ss60423753	NES15928997	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G		G							G					G		G			G					G		G			G				G									G
ss135479313	ENSMUSSNP4833655	ENSEMBL	ENSEMBL_Sanger	f	SNP			A																	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13477257					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60423753	NES15928997	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90960560 () rs orientation: forward

Symbol	Name	Function Class
Rr580440	regulatory region 580440	134 bp distal