rs13477111 SNP Detail

Summary

• ID
  rs13477111
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52743785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACCGAAA GGTGTTGTGG
  ACCTGAGGAA GATGGACTGG ACGGGGGGGG GGGGGGGGGT CTTTCAGTCA TTGGGGGACT
  TTGGCCTCTC CCTCCTTCTC TTCTGTTTTC TGGCCGTAAG GTAGCATTGA TTCTGCTCCG
  TGCTCCTGTT ATTGCTGGCC AGCGTGCCCA CCAGTCACCT GAAGCAACAG GAATACTGAT
  R
  AGAGCCTAGA ACCTCCAAAA GCAGGAGTCA AAACTCACCT GTTCTCTTAA TGAGTTAATT
  AACTCGAGTC TTCTGTTATT GTGGCAAAAA GCAAACAAAG CATAAACGTG AAGCTTCCCT
  TCCGGATAAA GGTGACATGG CATGAATGAC TAAAAAACTA AATATATTTT CCAAAGAAAT
  AAATATGGTG GAGAGATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16374591	03.052.998	TWGNF	TWGNF-Mouse-2	f	SNP	A	A	A	A	A	A	A	A	G	G	G	A	A	A		A	A	A	G	G	G	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A		A	G	G	A	A	A	G	A	A
ss45540099	mCV24465079	ABI	CRAMUS_MOUSE	f	SNP	A	A	A						G											G
ss46932470	NES10828496	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		A							A					G		G			A					A		A			A				A								A
ss135178646	ENSMUSSNP4210533	ENSEMBL	ENSEMBL_Sanger	f	SNP		A																		G
ss320765399	CHEV_3_52640286	CHEVERUD	SCREENING_POP	f	SNP																										A																	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13477111					SNP	A	A	A	A	A	A	A	A	G	G	G	A	A	A	A	A	A	A	G	G	G	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A	A	A	G	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932470	NES10828496	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52743785 () rs orientation: forward

Symbol	Name	Function Class
Gm65956	predicted gene, 65956	within coordinates
Rr576588	regulatory region 576588	508 bp proximal