rs13477063 SNP Detail

Summary

• ID
  rs13477063
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37727394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGC CTGATTCCCA GAGTAAAACT
  Y
  CAGATTGTTG TACTTCCCAG ATCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16374533	03.037.539	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	T	C	C	T	C	T	C	C	C	C	C	C	T	T	C	C	C	C	C	T	C	C	C	T	C	C	C	C	T	C	T	T	T	C	C		T	C	C	T	C	C	C	T	T	C
ss45515814	mCV22777417	ABI	CRAMUS_MOUSE	f	SNP	T	T	T						C										C
ss46913165	NES10828275	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C	T		T											C		C			C					C		T			T				C									T
ss134810667	ENSMUSSNP2189151	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T																C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13477063					SNP	T	T	T	C	C	T	C	T	C	C	C	C	C	C	T	T	C	C	C	C	C	T	C	C	C	T	C	C	C	C	T	C	T	T	T	C	C	C	T	C	C	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913165	NES10828275	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37727394 () rs orientation: forward

Symbol	Name	Function Class
Rr374835	regulatory region 374835	within coordinates
Rr406863	regulatory region 406863	within coordinates
Rr575537	regulatory region 575537	within coordinates
Rr575538	regulatory region 575538	371 bp proximal
Rr575539	regulatory region 575539	1730 bp proximal
Tssr33054	transcription start site region 33054	820 bp upstream