rs13476572 SNP Detail

Summary

• ID
  rs13476572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72926180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCATGTAC ACATGGTCCT
  GTTTGCAACC TCAAACCTCC TTATCATGTA CAAGTAAACA CTGCTGGATA AGGAGTATAA
  AGCAGTTCAT AAATTCTTCA TTTATCCAGA GCTCAAAATT TAAACATCAG TTTTGGAAGT
  TAAAAATGTA TGAGGTATTT AGTGGTACTC TAGAAAAAGC CAGAAGCTGA TCTTTCCCAA
  Y
  TTATGATATA AAGTACTCAG CCTTACATAT TATTATAGGC AGGAAACATT ATTGTACTGT
  ATATTATAGT TTCTGGATTG TTAAAGTATT TACAATCCAT CCTCTCTTAG GATTATTGTA
  ACAAAATAAA CTAAGGTTTA TAAAGTATTG ACTCAGCATA TATAAGTATG AAGCTTCCAT
  CTCTGGATTC TACAAACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16373898	02.074.046	TWGNF	TWGNF-Mouse-2	f	SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
ss45306038	mCV25048226	ABI	CRAMUS_MOUSE	f	SNP		T	C						T											T
ss146759587	ENSMUSSNP1085084	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C																	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13476572					SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72926180 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ola1	Obg-like ATPase 1			Intron
				Noncoding-Transcript-Variant
Rr559097	regulatory region 559097			207 bp distal
Rr559098	regulatory region 559098			825 bp proximal