rs13476205 SNP Detail

Summary

• ID
  rs13476205
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160347861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACAGTGAT ACAAATGAAG CTAGTCTAGT GACTATGACT
  GAATGCTCCC CTAGCCCCTC CCCCTTTTGA GGCTGTGGCT GGAAGGAGCC ATGAAGCCCT
  S
  AGCTGAGGCT GGTAAGGAGC ATACAGAAGA GGGACAGAGC TGCTAATTCC CTTGCTTTTT
  GTGCTGCTCA ATTCTGAAGT AAACTCATGG GAAATACAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16373426	01.161.171	TWGNF	TWGNF-Mouse-2	f	SNP	C	G	G	C	G	C	C	C	C	C	C	G	G	G	C	C	C	G	G	G	C	C	C	G	C	C	C	C	G	G	G	C	C	C	C	G	C	G		C	C	G	C	C	G	C	C	C	C
ss45193580	mCV24556264	ABI	CRAMUS_MOUSE	f	SNP	C	C	G						C											G
ss49727721	NES13050856	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	G	C									C					G		C			C					G		C			C				G
ss145892964	ENSMUSSNP5369496	ENSEMBL	ENSEMBL_Sanger	f	SNP			G																	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13476205					SNP	C	?	G	C	G	C	C	C	C	C	C	G	G	G	C	C	C	G	G	G	C	C	C	G	C	C	C	C	G	G	G	C	C	C	C	G	C	G	G	C	C	G	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49727721	NES13050856	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160347861 () rs orientation: forward

Symbol	Name	Function Class
Rabgap1l	RAB GTPase activating protein 1-like	Intron
Rr421674	regulatory region 421674	1366 bp distal
Rr421675	regulatory region 421675	449 bp proximal