rs13474773 SNP Detail

Summary

• ID
  rs13474773
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107571456 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             TTCCATCTAT ATAGACTTCC CTTCAAATAG TTTAGGTTGC AGAAGCACAG
  K
  TGCCCACAAG TTTGCTCTTA AAGGATAAAC CCTAAAGATA GGGCTCAGTG           
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46858110	NES10701436	PERLEGEN	MM_PANEL2	r	SNP	A	A	A	C	A	A	A	A	A	A		C		A	C	C		A
ss135585308	ENSMUSSNP5873592	ENSEMBL	ENSEMBL_Sanger	r	SNP		A						A					C
ss320865831	CHEV_3_107467058	CHEVERUD	SCREENING_POP	r	SNP											C						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13474773					SNP	T	T	T	G	T	T	T	T	T	T	G	G	G	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46858110	NES10701436	PERLEGEN	MM_PANEL	r	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107571456 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahcyl1	S-adenosylhomocysteine hydrolase-like 1			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr35073	transcription start site region 35073			231 bp downstream
Tssr35074	transcription start site region 35074			934 bp downstream