rs13474340 SNP Detail

Summary

• ID
  rs13474340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83752711 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCAGG CCCGTCCCGG CGGCCCGGGG
  R
  GCGCCATGTG GTTCATGTAC GTGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45917292	mCV24606559	ABI	CRAMUS_MOUSE	r	SNP	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs13474340					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83752711 () rs orientation: reverse

Symbol	Name	Function Class
Gm52907	predicted gene, 52907	156 bp upstream
Rr632937	regulatory region 632937	1283 bp distal
Rr632938	regulatory region 632938	39 bp distal
Rr632939	regulatory region 632939	74 bp proximal
Rr632940	regulatory region 632940	167 bp proximal
Rr632941	regulatory region 632941	472 bp proximal
Tex261	testis expressed gene 261	mRNA-UTR
Tssr1911	transcription start site region 1911	199 bp upstream
Tssr57375	transcription start site region 57375	78 bp downstream
Tssr61705	transcription start site region 61705	160 bp upstream
Tssr61706	transcription start site region 61706	149 bp upstream
Tssr61707	transcription start site region 61707	132 bp upstream
Tssr61708	transcription start site region 61708	114 bp upstream
Tssr61709	transcription start site region 61709	53 bp upstream
Tssr61710	transcription start site region 61710	17 bp downstream
Tssr61711	transcription start site region 61711	38 bp downstream