rs13474322 SNP Detail

Summary

• ID
  rs13474322
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95041293 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTCAA CAAGAAAGAA ACCGGAAGCA
  T
  AGAAGGCGAT AGTGTACTCT TTCTA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135510083	ENSMUSSNP4883920	ENSEMBL	ENSEMBL_Sanger	r	SNP	A
ss320841142	CHEV_3_94937904	CHEVERUD	SCREENING_POP	r	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs13474322					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95041293 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13498	CpG island 13498	within coordinates
D3Umi10	DNA segment, Chr 3, University of Michigan 10	within coordinates
Lysmd1	LysM, putative peptidoglycan-binding, domain containing 1	106 bp upstream
Rr367480	regulatory region 367480	within coordinates
Rr580822	regulatory region 580822	1393 bp distal
Rr580823	regulatory region 580823	19 bp proximal
Rr580824	regulatory region 580824	117 bp proximal
Rr580825	regulatory region 580825	1768 bp proximal
Scnm1	sodium channel modifier 1	mRNA-UTR
Tssr34419	transcription start site region 34419	69 bp upstream
Tssr34420	transcription start site region 34420	within coordinates
Tssr34421	transcription start site region 34421	7 bp downstream