rs13474087 SNP Detail

Summary

• ID
  rs13474087
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119459233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGC TGAACTTCAT GTCCTGTCTG
  M
  GTTCTGTTCT CGAAACGGGA GCTTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45878096	mCV25396593	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss133589829	ENSMUSSNP3040237	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss321928134	CHEV_6_119432290	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13474087					SNP	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119459233 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17911	CpG island 17911	973 bp distal
Fbxl14	F-box and leucine-rich repeat protein 14	mRNA-UTR
Rr637692	regulatory region 637692	1858 bp distal
Rr637693	regulatory region 637693	within coordinates
Rr637694	regulatory region 637694	607 bp proximal
Rr637695	regulatory region 637695	894 bp proximal
Tssr58506	transcription start site region 58506	878 bp downstream
Tssr58507	transcription start site region 58507	784 bp downstream
Tssr58508	transcription start site region 58508	731 bp downstream
Tssr58509	transcription start site region 58509	709 bp downstream
Tssr58510	transcription start site region 58510	321 bp downstream
Tssr62722	transcription start site region 62722	1778 bp upstream
Tssr62723	transcription start site region 62723	692 bp upstream
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron