TTGCC TCCGGCCTCA TCCACCGAGT Y TGTGTCACCA CTTGGTACGT ATCTG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
MSM/Ms |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss45471554 | mCV25256683 | ABI | CRAMUS_MOUSE | f | SNP | T | C | C | |||||||||||||||
ss46749224 | NES10739017 | PERLEGEN | MM_PANEL2 | f | SNP | T | C | C | C | C | C | T | C | C | T | C | C | T | C | ||||
ss135474293 | ENSMUSSNP6726889 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | C | C | T | ||||||||||||||
ss320836908 | CHEV_3_89053048 | CHEVERUD | SCREENING_POP | f | SNP | C | C | ||||||||||||||||
SNP Consensus Information | |||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
MSM/Ms |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs13473818 | SNP | T | T | C | C | C | C | C | T | C | C | C | T | T | C | C | T | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46749224 | NES10739017 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr3:89156433 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Krtcap2 | keratinocyte associated protein 2 | Coding-Synonymous | ||||||
Rr580001 | regulatory region 580001 | 1127 bp proximal | ||||||
Rr580002 | regulatory region 580002 | 1208 bp proximal | ||||||
Rr580003 | regulatory region 580003 | 1425 bp proximal | ||||||
Rr580004 | regulatory region 580004 | 1469 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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