rs13473818 SNP Detail

Summary

• ID
  rs13473818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89156433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCC TCCGGCCTCA TCCACCGAGT
  Y
  TGTGTCACCA CTTGGTACGT ATCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45471554	mCV25256683	ABI	CRAMUS_MOUSE	f	SNP		T	C						C
ss46749224	NES10739017	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	T	C	C		T		C	C	T		C
ss135474293	ENSMUSSNP6726889	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C				T
ss320836908	CHEV_3_89053048	CHEVERUD	SCREENING_POP	f	SNP											C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13473818					SNP	T	T	C	C	C	C	C	T	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749224	NES10739017	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89156433 () rs orientation: forward

Symbol	Name	Function Class
Krtcap2	keratinocyte associated protein 2	Coding-Synonymous
Rr580001	regulatory region 580001	1127 bp proximal
Rr580002	regulatory region 580002	1208 bp proximal
Rr580003	regulatory region 580003	1425 bp proximal
Rr580004	regulatory region 580004	1469 bp proximal