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rs13473818 SNP Detail
Summary
  • ID
    rs13473818
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:89156433 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTGCC TCCGGCCTCA TCCACCGAGT
    Y
    TGTGTCACCA CTTGGTACGT ATCTG                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss45471554 mCV25256683 ABI CRAMUS_MOUSE f SNP T C C
ss46749224 NES10739017 PERLEGEN MM_PANEL2 f SNP T C C C C C T C C T C C T C
ss135474293 ENSMUSSNP6726889 ENSEMBL ENSEMBL_Sanger f SNP T C C T
ss320836908 CHEV_3_89053048 CHEVERUD SCREENING_POP f SNP C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs13473818 SNP T T C C C C C T C C C T T C C T C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46749224 NES10739017 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:89156433 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Krtcap2 keratinocyte associated protein 2 Coding-Synonymous
Rr580001 regulatory region 580001 1127 bp proximal
Rr580002 regulatory region 580002 1208 bp proximal
Rr580003 regulatory region 580003 1425 bp proximal
Rr580004 regulatory region 580004 1469 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory