rs13473708 SNP Detail

Summary

• ID
  rs13473708
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97269354 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCTCC CTACACCAGC TACTATGGCA
  R
  CATCTACAAT CCCTTGTCCT CTCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45881605	mCV22633281	ABI	CRAMUS_MOUSE	r	SNP	C	T					C		C
ss51772753	NES14782454	PERLEGEN	MM_PANEL2	r	SNP	C	T	C	T	T	C		T	C	T	C	T	T	C	T	T
ss133417109	ENSMUSSNP4468612	ENSEMBL	ENSEMBL_Sanger	r	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13473708					SNP	G	A	G	A	A	G	G	A	G	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51772753	NES14782454	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97269354 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D6Mit326	DNA Segment, Chr 6, Massachusetts Institute of Technology 326			456 bp distal
Frmd4b	FERM domain containing 4B			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr635133	regulatory region 635133			610 bp distal
Rr635134	regulatory region 635134			778 bp proximal