rs13471233 SNP Detail

Summary

• ID
  rs13471233
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149238360 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTTGG CTGGACCCTC AATTATGGCG
  S
  CATTGCCCTG ATGTGGAGAG GGGGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45721891	mCV22641303	ABI	CRAMUS_MOUSE	r	SNP		C	C				C		G
ss46700493	NES10944845	PERLEGEN	MM_PANEL2	r	SNP	C		C	G	C	C		C	G	G	C		G	G	C	G		C
ss148029161	ENSMUSSNP4548720	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	C						G
ss321425100	CHEV_4_148528012	CHEVERUD	SCREENING_POP	r	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13471233					SNP	G	G	G	C	G	G	G	G	C	C	G	C	C	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46700493	NES10944845	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149238360 () rs orientation: reverse

Symbol	Name	Function Class
Pgd	phosphogluconate dehydrogenase	Coding-NonSynonymous
Rr604846	regulatory region 604846	1128 bp proximal
Rr604847	regulatory region 604847	1520 bp proximal
Rr604848	regulatory region 604848	1842 bp proximal
Tssr44628	transcription start site region 44628	43 bp downstream
Tssr44629	transcription start site region 44629	310 bp downstream