rs13470058 SNP Detail

Summary

• ID
  rs13470058
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134999977 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AACGA GCAAGCCAGC GAGTGAGCGA
  R
  CGGCGGGAAC CCGCAGCCAC AGCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45685564	mCV25366122	ABI	CRAMUS_MOUSE	r	SNP	T	C	C
ss147543287	ENSMUSSNP4150456	ENSEMBL	ENSEMBL_Sanger	r	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs13470058					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134999977 () rs orientation: reverse

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	mRNA-UTR
Cpgi15068	CpG island 15068	within coordinates
Rr398589	regulatory region 398589	224 bp upstream
Rr601975	regulatory region 601975	within coordinates
Rr601976	regulatory region 601976	988 bp distal
Rr601977	regulatory region 601977	942 bp distal
Rr601978	regulatory region 601978	196 bp distal
Rr601979	regulatory region 601979	126 bp proximal
Rr601980	regulatory region 601980	138 bp proximal
Rr601981	regulatory region 601981	442 bp proximal
Rr601982	regulatory region 601982	1878 bp proximal
Tssr39607	transcription start site region 39607	484 bp downstream
Tssr43972	transcription start site region 43972	1498 bp upstream
Tssr43973	transcription start site region 43973	40 bp downstream
Tssr43974	transcription start site region 43974	68 bp downstream
Tssr43975	transcription start site region 43975	88 bp downstream
Tssr43976	transcription start site region 43976	115 bp downstream
Tssr43977	transcription start site region 43977	132 bp downstream