rs13469856 SNP Detail

Summary

• ID
  rs13469856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82938899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG GTCCTGATGG TCGCCGAGAA
  R
  TGGTCAAAGA AGTGATCACC TCGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45564089	mCV23187594	ABI	CRAMUS_MOUSE	f	SNP		G					G		A
ss50990076	NES13925800	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	G	G		G	A	G	G		G	G	G	G		G
ss135410290	ENSMUSSNP1247467	ENSEMBL	ENSEMBL_Sanger	f	SNP									A
ss320820863	CHEV_3_82835514	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13469856					SNP	G	G	A	A	G	G	G	G	A	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990076	NES13925800	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82938899 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Coding-NonSynonymous
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	106 bp upstream
Tssr29668	transcription start site region 29668	1383 bp downstream
Tssr29669	transcription start site region 29669	1333 bp downstream
Tssr29670	transcription start site region 29670	1296 bp downstream
Tssr29671	transcription start site region 29671	747 bp downstream
Tssr29672	transcription start site region 29672	654 bp downstream
Tssr29673	transcription start site region 29673	607 bp downstream
Tssr29674	transcription start site region 29674	573 bp downstream
Tssr29675	transcription start site region 29675	567 bp downstream
Tssr29676	transcription start site region 29676	553 bp downstream
Tssr29677	transcription start site region 29677	538 bp downstream
Tssr29678	transcription start site region 29678	463 bp downstream
Tssr29679	transcription start site region 29679	404 bp downstream
Tssr29680	transcription start site region 29680	380 bp downstream
Tssr29681	transcription start site region 29681	278 bp downstream
Tssr29682	transcription start site region 29682	247 bp downstream
Tssr29683	transcription start site region 29683	216 bp downstream
Tssr29684	transcription start site region 29684	177 bp downstream
Tssr29685	transcription start site region 29685	131 bp downstream
Tssr29686	transcription start site region 29686	42 bp downstream
Tssr29687	transcription start site region 29687	within coordinates
Tssr29688	transcription start site region 29688	23 bp upstream
Tssr29689	transcription start site region 29689	49 bp upstream
Tssr29690	transcription start site region 29690	79 bp upstream
Tssr29691	transcription start site region 29691	125 bp upstream
Tssr29692	transcription start site region 29692	141 bp upstream
Tssr29693	transcription start site region 29693	172 bp upstream
Tssr29694	transcription start site region 29694	205 bp upstream
Tssr29695	transcription start site region 29695	231 bp upstream
Tssr29696	transcription start site region 29696	244 bp upstream
Tssr29697	transcription start site region 29697	268 bp upstream
Tssr29698	transcription start site region 29698	405 bp upstream
Tssr29699	transcription start site region 29699	487 bp upstream
Tssr29700	transcription start site region 29700	500 bp upstream
Tssr29701	transcription start site region 29701	532 bp upstream
Tssr33800	transcription start site region 33800	469 bp upstream
Tssr33801	transcription start site region 33801	106 bp upstream
Tssr33802	transcription start site region 33802	within coordinates