rs13469854 SNP Detail

Summary

• ID
  rs13469854
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90396708 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGATT CCAGGAAAGT CTCTGTAGAC
  Y
  TTTGATTTTT TTTGCACTAT GTACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320837895	CHEV_3_90293323	CHEVERUD	SCREENING_POP	r	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs13469854					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90396708 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13464	CpG island 13464	1351 bp proximal
Ilf2	interleukin enhancer binding factor 2	1022 bp downstream
Rr397812	regulatory region 397812	1597 bp upstream
Rr580375	regulatory region 580375	1622 bp proximal
Rr580376	regulatory region 580376	1637 bp proximal
Rr580377	regulatory region 580377	1749 bp proximal
Snapin	SNAP-associated protein	mRNA-UTR
Tssr944	transcription start site region 944	1464 bp downstream
Tssr34231	transcription start site region 34231	244 bp upstream
Tssr34232	transcription start site region 34232	1316 bp downstream
Tssr34233	transcription start site region 34233	1381 bp downstream
Tssr34234	transcription start site region 34234	1574 bp downstream