rs13469443 SNP Detail

Summary

• ID
  rs13469443
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:168510088 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGGGC CCCACGGTCA CCACCAAGGT
  H
  CGGAGGACCA TGAGCAGCCG TGTCC                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss37504223	NES08854298	PERLEGEN	MM_PANEL2	r	SNP			T		A		A
ss148272186	ENSMUSSNP7162640	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	G		G
ss320610180	CHEV_2_168493668	CHEVERUD	SCREENING_POP	r	SNP						G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs13469443					SNP	C	C	A	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37504223	NES08854298	PERLEGEN	MM_PANEL	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168510088 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp9a	ATPase, class II, type 9A			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr374244	regulatory region 374244			785 bp upstream
Rr571055	regulatory region 571055			1225 bp proximal
Rr571056	regulatory region 571056			1719 bp proximal
Rr571057	regulatory region 571057			1931 bp proximal
Tssr27856	transcription start site region 27856			1884 bp downstream
Tssr27857	transcription start site region 27857			1920 bp downstream