rs13469294 SNP Detail

Summary

• ID
  rs13469294
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70452664 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CGGAG GACGGACACA CTCCCACCAC
  K
  GAATCACCAC CCTCCAGACC CGCGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45629347	mCV22578180	ABI	CRAMUS_MOUSE	r	SNP	A	C	C	C
ss146496717	ENSMUSSNP4042746	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs13469294					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70452664 () rs orientation: reverse

Symbol	Name	Function Class
Megf9	multiple EGF-like-domains 9	Coding-Synonymous
Rr398312	regulatory region 398312	467 bp upstream
Rr593887	regulatory region 593887	491 bp proximal
Rr593888	regulatory region 593888	1992 bp proximal
Tssr42123	transcription start site region 42123	443 bp downstream
Tssr42124	transcription start site region 42124	477 bp downstream