rs13469098 SNP Detail

Summary

• ID
  rs13469098
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:73987324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTA GAATCAAGTC CAGAGTCACT
  R
  GGACTTTCTT TTACCATGCC CCAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss137891148	ENSMUSSNP2945129	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324099359	CHEV_12_75041537	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs13469098					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73987324 () rs orientation: forward

Symbol	Name	Function Class
Gm15283	predicted gene 15283	within coordinates
Hif1a	hypoxia inducible factor 1, alpha subunit	Coding-Synonymous
Tssr113859	transcription start site region 113859	within coordinates
Tssr113860	transcription start site region 113860	33 bp upstream
Tssr113861	transcription start site region 113861	1146 bp upstream
Tssr113862	transcription start site region 113862	1204 bp upstream
Tssr113863	transcription start site region 113863	1240 bp upstream
Tssr113864	transcription start site region 113864	1274 bp upstream
Tssr113865	transcription start site region 113865	1419 bp upstream
Tssr113866	transcription start site region 113866	1498 bp upstream
Tssr113867	transcription start site region 113867	1705 bp upstream