rs13468333 SNP Detail

Summary

• ID
  rs13468333
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119547871 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             ATTGAACAAA GTGTTTACAA TAATTACCAA GGCAAAGTTG AACAGAACAC
  Y
  TCTTTGTGAT GTCATCATCA GGCCGGCAAT TTGACTCTAG GAGCTGCACA           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45930248	mCV22718032	ABI	CRAMUS_MOUSE	r	SNP	G	A
ss133591148	ENSMUSSNP6329560	ENSEMBL	ENSEMBL_Sanger	r	SNP	G
ss321928753	CHEV_6_119520928	CHEVERUD	SCREENING_POP	r	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs13468333					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119547871 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Erc1	ELKS/RAB6-interacting/CAST family member 1			mRNA-UTR
				Noncoding-Transcript-Variant
Gm44317	predicted gene, 44317			within coordinates
Rr637716	regulatory region 637716			1297 bp proximal