rs13466004 SNP Detail

Summary

• ID
  rs13466004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116461379 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TAGCA CAGTTTGGCA AATCTATCGA
  Y
  GTCATTGAAA AGAGAATGGG TGAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16375603	04.114.604	TWGNF	TWGNF-Mouse-2	r	SNP	A	A	G	G	A	A	A	A	A	G	A	A	A	G	G	A	G	G	G	G	A	A	G	G	A	A	A	G	G	G	A	A	G	G	G	G	G		A	G	G	A	G	G	A	A	A	G
ss37694417	NES09222031	PERLEGEN	MM_PANEL2	r	SNP	A		G	G	A	A		A							G					G		A							G		A			G				G									A
ss45610546	mCV23197834	ABI	CRAMUS_MOUSE	r	SNP	A	A	G						A											G
ss147279813	ENSMUSSNP4248167	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	G																	G
ss321277576	CHEV_4_116276787	CHEVERUD	SCREENING_POP	r	SNP																									A																		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13466004					SNP	T	T	C	C	T	T	T	T	T	C	T	T	T	C	C	T	C	C	C	C	T	T	C	C	T	T	T	C	C	C	T	T	C	C	C	C	C	C	T	C	C	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694417	NES09222031	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116461379 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nasp	nuclear autoantigenic sperm protein (histone-binding)			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr597935	regulatory region 597935			1389 bp distal