rs13465384 SNP Detail

Summary

• ID
  rs13465384
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58433040 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             CGGCTCTGAT CGCGGTGCCT ACGCCGTCTA CAGCCACTGG GCCGGGACGC
  S
  GAGCGCTGGA ACACCGGCAG CCGCCGATCG CGGCGGTCTG AGCAGCCTTT           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45431782	mCV24915805	ABI	CRAMUS_MOUSE	r	SNP	G	C	G	C
ss135207059	ENSMUSSNP919107	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	C		C
ss320783119	CHEV_3_58329541	CHEVERUD	SCREENING_POP	r	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13465384					SNP	C	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58433040 () rs orientation: reverse

Symbol	Name	Function Class
6720482G16Rik	RIKEN cDNA 6720482G16 gene	1311 bp upstream
Cpgi13201	CpG island 13201	within coordinates
Eif2a	eukaryotic translation initiation factor 2A	212 bp upstream
Rr397681	regulatory region 397681	134 bp upstream
Rr577247	regulatory region 577247	within coordinates
Rr577248	regulatory region 577248	12 bp distal
Rr577249	regulatory region 577249	263 bp proximal
Serp1	stress-associated endoplasmic reticulum protein 1	mRNA-UTR
Tssr886	transcription start site region 886	113 bp downstream
Tssr29207	transcription start site region 29207	491 bp downstream
Tssr29208	transcription start site region 29208	196 bp upstream
Tssr29209	transcription start site region 29209	389 bp upstream
Tssr29210	transcription start site region 29210	414 bp upstream
Tssr33349	transcription start site region 33349	459 bp upstream
Tssr33350	transcription start site region 33350	98 bp downstream
Tssr33351	transcription start site region 33351	123 bp downstream
Tssr33352	transcription start site region 33352	149 bp downstream
Tssr33353	transcription start site region 33353	248 bp downstream
Tssr33354	transcription start site region 33354	274 bp downstream